GMAP

Description

gmap website

GMAP: A Genomic Mapping and Alignment Program for mRNA and EST Sequences. GSNAP: Genomic Short-read Nucleotide Alignment Program. Note: This version should be more stable because it only supports simd instructions up to the sse2 level.

Environment Modules

Run module spider gmap to find out what environment modules are available for this application.

Environment Variables

• HPC_GMAP_DIR - installation directory
• HPC_GMAP_BIN - executable directory

Categories

biology, genomics, ngs