giraf¶

Description¶

GiRaF is a computational tool for identification of reassortments in influenza viruses from sequence databases of isolates.

Environment Modules¶

Run module spider giraf to find out what environment modules are available for this application.

Environment Variables¶

HPC_GIRAF_DIR - installation directory
HPC_GIRAF_BIN - executable directory

Citation¶

If you publish research that uses giraf you have to cite it as follows:

Nagarajan, N., & Kingsford, C. (2011). GiRaF: Robust, computational identification of influenza reassortments via graph mining. Nucleic Acids Research, 39(6), e34. https://doi.org/10.1093/nar/gkq1240

Categories¶

sequencing, biology