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Gimmemotifs

Description

gimmemotifs website

GimmeMotifs is an analysis framework for transcription factor motif analysis written in Python. It contains command-line scripts to predict de novo motifs, scan for known motifs, identify differential motifs, calculate motif enrichment statistics, plot sequence logos and more. In addition, all this functionality is available from a Python API. Modules system sets up the following environment variables for this module:

Environment Modules

Run module spider gimmemotifs to find out what environment modules are available for this application.

Environment Variables

  • HPC_GIMMEMOTIFS_DIR - installation directory
  • HPC_GIMMEMOTIFS_BIN - executable directory

Categories

biology, genetics