genomic-fluidity¶

Description¶

A collection of Perl scripts to calculate gene-level similarity among annotated genomes as used in Kislyuk et al. BMC Genomics 12: 32 (2011). The scripts can be executed from the command line and the only dependencies are BioPerl and NCBI BLAST.

Environment Modules¶

Run module spider genomic-fluidity to find out what environment modules are available for this application.

Environment Variables¶

HPC_GENOMICFLUIDITY_DIR - installation directory
HPC_GENOMICFLUIDITY_BIN - executable directory
HPC_GENOMICFLUIDITY_DOC - documentation directory
HPC_GENOMICFLUIDITY_LIB - library directory

Categories¶

phylogenetics