Skip to content

GenGen

Description

gengen website

GenGen is a suite of free software tools to facilitate the analysis of high-throughput genomics data sets. The package is currently a work-in-progress and infrequently updated.

Environment Modules

Run module spider gengen to find out what environment modules are available for this application.

Environment Variables

  • HPC_GENGEN_DIR - installation directory
  • HPC_GENGEN_BIN - executable directory
  • HPC_GENGEN_DOC - documentation directory
  • HPC_GENGEN_EXE - examples directory

Citation

If you publish research that uses gengen you have to cite it as follows:

  • Wang, K., Li, M., & Bucan, M. (2007). Pathway-based approaches for analysis of genome-wide association studies. American Journal of Human Genetics, 81(6), 1278–1283. https://doi.org/10.1086/522374

  • Wang, K., Li, M., & Hakonarson, H. (2010). Analysing biological pathways from genome-wide association studies. Nature Reviews Genetics, 11(12), 843–854. https://doi.org/10.1038/nrg2884

Categories

biology, phylogenetics