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NCBI GenBank Tools

Description

genbank_tools website

This module enables the use of the NCBI GenBank Tools Command-line programs related to the creation of sequence records and their submission to GenBank. Included tools: tbl2asn - a command-line program that automates the creation of sequence records for submission to GenBank. It uses many of the same functions as Sequin but is driven generally by data files. Tbl2asn generates .sqn files for submission to GenBank. Additional manual editing is not required before submission. Modules system sets up the following environment variables for this module:

Environment Modules

Run module spider genbank_tools to find out what environment modules are available for this application.

Environment Variables

  • HPC_GENBANK_DIR - installation directory

Categories

biology