GCE¶

Description¶

GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis rate of the sequencing sample, developed by Binghang Liu (binghang.liu@qq.com). The estimated result can be used to design the sequencing strategy.

Environment Modules¶

Run module spider gce to find out what environment modules are available for this application.

Environment Variables¶

HPC_GCE_DIR - installation directory
HPC_GCE_BIN - executable directory

Citation¶

If you publish research that uses gce you have to cite it as follows:

Liu, B., Shi, Y., Yuan, J., Hu, X., Zhang, H., Li, N., Li, Z., Chen, Y., Mu, D., Fan, W., & et al. (2013). Estimation of genomic characteristics by analyzing k-mer frequency in de novo genome projects. arXiv preprint, arXiv:1308.2012. https://doi.org/10.48550/arXiv.1308.2012

Categories¶

biology, genomics