GAML

Description

gaml website

Genome Assembly by Maximum Likelihood (GAML) is a prototype genome assembly tool based on maximizing likelihood of the assembly in a model encompassing error rate, insert length and other features of indvidual sequencing technologies. It can combine datasets produced by different technologies (currently Illumina, 454 and Pacific Biosciences).

Environment Modules

Run module spider gaml to find out what environment modules are available for this application.

Environment Variables

• HPC_GAML_DIR - installation directory
• HPC_GAML_BIN - executable directory
• HPC_GAML_DOC - documents directory

Categories

biology, genomics, assembly