Usage

Executables need to be run from the root of the github repository. Either copy $FUNGANI_DIR or clone from github, and cd into personal 'fungani' folder:

$ module load fungani/0.1.0
$ cp -r $FUNGANI_DIR /path/to/myfungani
$ cd /path/to/myfungani

Command line executable

$ python -m fungani.cli -h
usage: fungani [-h] [-t THRESHOLD] [-p PERCENT] [-w SIZE] [-g OVERLAP] [-j CPUS] [-o OUTDIR] [-u] [-c] reference test

GUI can be launched in an Open Ondemand terminal:

$ python -m fungani