Usage

If you are setting up funannotate for analysis you may have to run the following unannotate db setup job first:

if [[ ! -d config ]]; then
module purge; module load augustus
rsync -a $HPC_AUGUSTUS_CONF .
fi

export AUGUSTUS_CONFIG_PATH=$(pwd)/config

funannotate setup -i all --update -d ./funannotate_db

Set the following environment variable in the job scripts for subsequent funannotate analyses.

export FUNANNOTATE_DB=$(pwd)/funannotate_db