FSL

Description

fsl website

FSL is a comprehensive library of analysis tools for FMRI, MRI and DTI brain imaging data. Most of the tools can be run both from the command line and as GUIs ("point-and-click" graphical user interfaces).

Environment Modules

Run module spider fsl to find out what environment modules are available for this application.

Environment Variables

• HPC_FSL_DIR - installation directory
• HPC_FSL_BIN - executable directory

Citation

If you publish research that uses fsl you have to cite it as follows:

• Jenkinson, M., Beckmann, C. F., Behrens, T. E., Woolrich, M. W., & Smith, S. M. (2012). FSL. NeuroImage, 62(2), 782–790. https://doi.org/10.1016/j.neuroimage.2011.09.015

• Woolrich, M. W., Jbabdi, S., Patenaude, B., Chappell, M., Makni, S., Behrens, T., Beckmann, C., Jenkinson, M., & Smith, S. M. (2009). Bayesian analysis of neuroimaging data in FSL. NeuroImage, 45(1 Suppl), S173–S186. https://doi.org/10.1016/j.neuroimage.2008.10.055

• Smith, S. M., Jenkinson, M., Woolrich, M. W., Beckmann, C. F., Behrens, T. E. J., Johansen-Berg, H., Bannister, P. R., De Luca, M., Drobnjak, I., Flitney, D. E., Niazy, R., Saunders, J., Vickers, J., Zhang, Y., De Stefano, N., Brady, J. M., & Matthews, P. M. (2004). Advances in functional and structural MR image analysis and implementation as FSL. NeuroImage, 23(Suppl 1), S208–S219. https://doi.org/10.1016/j.neuroimage.2004.07.051

Categories

biology, neuroscience, imaging