Usage

Starting with freesurfer/6.0.0 the software is available as a Singularity container. To run any executable use the 'launch_freesurfer' wrapper after loading the module.

E.g.

$ launch_freesurfer dcmunpack

Note

Freesurfer comes with Freeview software. Freeview is a completely separate software from Freesurfer and is used purely for data visualization. Freesurfer 6 includes Freeview 2.0.

Warning

Do not use the '-debug' option with the trac-all command as it can consume filesystem inodes very quickly in the Freesurfer output directory. This can exhaust inode supply and lead to a work stoppage for multiple research groups. If a user must use the '-debug' option with Freesurfer commands they must first engage UFRC staff by submitting a support request at https://support.rc.ufl.edu.