FRAMA¶

Description¶

FRAMA is a transcriptome assembly and mRNA annotation pipeline, which utilizies external and newly developed software components. Starting with RNA-seq data and a reference transcriptome, FRAMA performs 4 steps: 1) de novo transcript assembly (Trinity), 2) gene symbol assignment (best bidirectional blastn hit) and 3) fusion detection and scaffolding 4) contig annotation (CDS, mRNA boundaries).

Environment Modules¶

Run module spider frama to find out what environment modules are available for this application.

Environment Variables¶

HPC_FRAMA_DIR - installation directory
HPC_FRAMA_BIN - executable directory

Categories¶

biology