fMRIPrep¶

Description¶

fmriprep is a functional magnetic resonance imaging (fMRI) data preprocessing pipeline that is designed to provide an easily accessible, state-of-the-art interface that is robust to variations in scan acquisition protocols and that requires minimal user input, while providing easily interpretable and comprehensive error and output reporting. It performs basic processing steps (coregistration, normalization, unwarping, noise component extraction, segmentation, skullstripping etc.) providing outputs that can be easily submitted to a variety of group level analyses, including task-based or resting-state fMRI, graph theory measures, surface or volume-based statistics, etc. * FMRIPREP - container directory

Environment Modules¶

Run module spider fmriprep to find out what environment modules are available for this application.

Environment Variables¶

HPC_FMRIPREP_DIR - installation directory
HPC_FMRIPREP_BIN - executables directory

Citation¶

If you publish research that uses fmriprep you have to cite it as follows:

Please acknowledge this work using the citation boilerplate that fMRIPrep includes in the visual report generated for every subject processed.

Categories¶

data_mining