fit-sne¶
Description¶
t-Stochastic Neighborhood Embedding (t-SNE) is a highly successful method for dimensionality reduction and visualization of high dimensional datasets. A popular implementation of t-SNE uses the Barnes-Hut algorithm to approximate the gradient at each iteration of gradient descent. We accelerated this implementation as follows:
Environment Modules¶
Run module spider fit-sne to find out what environment modules are available for this application.
Environment Variables¶
- HPC_FITSNE_DIR - installation directory
- HPC_FITSNE_BIN - executable directory
- HPC_FITSNE_EXE - example directory
Categories¶
phylogenetics