fimpute¶

Description¶

FImpute (ef-impute) was mainly developed for large scale genotype imputation in livestock where hundreds of thousands of individuals are genotypes with different panels. FImpute uses an overlapping sliding window approach to efficiently exploit relationships or haplotype similarities between target and reference individuals.

Environment Modules¶

Run module spider fimpute to find out what environment modules are available for this application.

Environment Variables¶

HPC_IQ_TREE_DIR - installation directory
HPC_IQ_TREE_BIN - executable directory

Categories¶

biology, genetics, genomics