FastSpar¶

Description¶

FastSpar is a c++ implementation of the SparCC algorithm published here: Friedman, J. & Alm, E. J. Inferring correlation networks from genomic survey data. PLoS Comput. Biol. 8, e1002687 (2012). FastSpar is up to several thousand times faster than the original Python2 implementation and uses much less memory.

Environment Modules¶

Run module spider fastspar to find out what environment modules are available for this application.

Environment Variables¶

HPC_FASTSPAR_DIR - installation directory
HPC_FASTSPAR_BIN - executable directory

Categories¶

biology, genomics