Usage
| Command | Action |
|---|---|
| fastq-sort | Sort fastq entries by various keys |
| fastq-grep | Match sequences against regular expressions |
| fastq-kmers | Count k-mer occurrences |
| fastq-match | Local sequence alignment (smith-waterman) |
| fastq-qual | Tabulate quality scores |
| fastq-sample | Randomly sample reads, with or without replacement |
| fastq-uniq | Count duplicate reads |
| fastq-qualadj | Adjust quality scores by a fixed offset |