Usage

Command Action
fastq-sort Sort fastq entries by various keys
fastq-grep Match sequences against regular expressions
fastq-kmers Count k-mer occurrences
fastq-match Local sequence alignment (smith-waterman)
fastq-qual Tabulate quality scores
fastq-sample Randomly sample reads, with or without replacement
fastq-uniq Count duplicate reads
fastq-qualadj Adjust quality scores by a fixed offset