FastPlast

Description

fastplast website

Fast-Plast is a pipeline that leverages existing and novel programs to quickly assemble, orient, and verify whole chloroplast genome sequences. For most datasets with sufficient data, Fast-Plast is able to produce a full-length de novo chloroplast genome assembly in approximately 30 minutes with no user mediation. In addition to a chloroplast sequence, Fast-Plast identifies chloroplast genes present in the final assembly.

Environment Modules

Run module spider fastplast to find out what environment modules are available for this application.

Environment Variables

• HPC_FASTPLAST_DIR - installation directory
• HPC_FASTPLAST_BIN - executable directory

Categories

phylogenetics