fast-gep¶
Description¶
Fast and easy way to infer high-resolution genealogical relationship of bacterial isolates with WGS assembly data.
Environment Modules¶
Run module spider fast-gep to find out what environment modules are available for this application.
Environment Variables¶
- HPC_FASTGEP_DIR - installation directory
- HPC_FASTGEP_BIN - executable directory
- HPC_FASTGEP_EXE - examples directory
Citation¶
If you publish research that uses fast-gep you have to cite it as follows:
Cornet, L., Baurain, D., Wilmotte, A., & Javaux, E. J. (2018). Genome-by-genome approach for fast bacterial genealogical relationship evaluation. Bioinformatics, 34(17), 3025–3027. https://doi.org/10.1093/bioinformatics/bty217
Categories¶
phylogenetics