fanc¶
Description¶
FAN-C provides a pipeline for analysing Hi-C data starting at mapped paired-end sequencing reads.
Environment Modules¶
Run module spider fanc to find out what environment modules are available for this application.
Environment Variables¶
- HPC_FANC_DIR - installation directory
- HPC_FANC_BIN - executable directory
Citation¶
If you publish research that uses fanc you have to cite it as follows:
- Kruse, K., Hug, C.B. & Vaquerizas, J.M. 2020. FAN-C: a feature-rich framework for the analysis and visualisation of chromosome conformation capture data. Genome Biol 21, 303. https://doi.org/10.1186/s13059-020-02215-9
Categories¶
biology, genomics, ngs