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FALCON_unzip

Description

falcon_unzip website

FALCON-Unzip contains the modules that works with FALCON: https://github.com/PacificBiosciences/FALCON https://github.com/PacificBiosciences/FALCON-integrate for full diploid assembly (representing haplotype specific contigs as "haplotigs" as assembly output). A manuscript is deposited in BioRxiv http://biorxiv.org/content/early/2016/06/03/056887 for our evalution and showing the application of the algorithms and the software on multiple diploid genomes.

Environment Modules

Run module spider falcon_unzip to find out what environment modules are available for this application.

Environment Variables

  • HPC_FALCONUNZIP_DIR - installation directory
  • HPC_FALCONUNZIP_BIN - executable directory

Additional Usage Information

FALCON-Unzip is used in conjunction with the following tools for full diploid genome assembly:

FALCON – the core long-read assembler FALCON-Integrate – an integration framework to run FALCON and FALCON-Unzip pipelines together FALCON-Unzip extends the capabilities of FALCON by generating phased diploid assemblies, outputting haplotype-specific contigs referred to as haplotigs.

For a detailed evaluation and demonstration of its application on multiple diploid genomes, refer to the FALCON-Unzip manuscript.

Categories

biology