FALCON

Description

falcon website

The Falcon tool kit is a set of simple code collection which I use for studying efficient assembly algorithm for haploid and diploid genomes. It has some back-end code implemented in C for speed and some simple front-end written in Python for convenience.

Environment Modules

Run module spider falcon to find out what environment modules are available for this application.

Environment Variables

• HPC_FALCON_DIR - installation directory
• HPC_FALCON_BIN - executable directory

Additional Usage Information

Errors and Pitfalls

• Make sure that the fasta headers are in a format acceptable to FALCON. If you encounterd a Fasta2DB error Line 1: Pacbio header line format error see FALCON issue #251 for an explanation.

• TAP is a part of FALCON module.

Categories

biology, ngs, sequencing