FALCON¶

Description¶

The Falcon tool kit is a set of simple code collection which I use for studying efficient assembly algorithm for haploid and diploid genomes. It has some back-end code implemented in C for speed and some simple front-end written in Python for convenience.

Environment Modules¶

Run module spider falcon to find out what environment modules are available for this application.

Environment Variables¶

HPC_FALCON_DIR - installation directory
HPC_FALCON_BIN - executable directory

Additional Usage Information¶

Errors and Pitfalls¶

Make sure that the fasta headers are in a format acceptable to FALCON. If you encounterd a Fasta2DB error Line 1: Pacbio header line format error see FALCON issue #251 for an explanation.
TAP is a part of FALCON module.

Categories¶

biology, ngs, sequencing