ExpansionHunterDenovo

Description

expansionhunterdenovo website

ExpansionHunter Denovo (EHdn) is a suite of tools for detecting novel expansions of short tandem repeats (STRs). EHdn is intended for analysis of a collection of BAM/CRAM files containing alignments of short (100-200bp) reads.

Environment Modules

Run module spider expansionhunterdenovo to find out what environment modules are available for this application.

Environment Variables

• HPC_EXPANSIONHUNTERDENOVO_DIR - installation directory

Categories

biology, genomics