ExaBayes¶

Description¶

ExaBayes is a software package for Bayesian tree inference. It is particularly suitable for large-scale analyses on computer clusters.

Run module spider exabayes to find out what environment modules are available for this application.

If you publish research that uses exabayes you have to cite it as follows:

Fredrik Ronquist, Maxim Teslenko, Paul van der Mark, Daniel L Ayres, Aaron Darling, Sebastian Höhna, Bret Larget, Liang Liu, Marc a Suchard, and John P Huelsenbeck. MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Systematic biology, 61(3):539-42, May 2012. [bib | DOI]
Alexei J Drummond, Marc a Suchard, Dong Xie, and Andrew Rambaut. Bayesian phylogenetics with BEAUti and the BEAST 1.7. Molecular biology and evolution, 29(8):1969-73, August 2012. [bib | DOI]
Clemens Lakner, Paul van der Mark, John P Huelsenbeck, Bret Larget, and Fredrik Ronquist. Efficiency of Markov chain Monte Carlo tree proposals in Bayesian phylogenetics. Systematic biology, 57(1):86-103, February 2008. [bib | DOI | http]
Alexandros Stamatakis. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics, 22(21):2688-2690, November 2006. [bib | DOI | http]
Alexandros Stamatakis, Andre J Aberer, Christian Goll, Stephen A Smith, Simon A Berger, and Fernando Izquierdo-Carrasco. RAxML-Light: a tool for computing terabyte phylogenies. Bioinformatics (Oxford, England), 28(15):2064-6, August 2012. [bib | DOI]

phylogenetics