ExaBayes¶

Description¶

ExaBayes is a software package for Bayesian tree inference. It is particularly suitable for large-scale analyses on computer clusters.

Run module spider exabayes to find out what environment modules are available for this application.

If you publish research that uses exabayes you have to cite it as follows:

Ronquist, F., Teslenko, M., van der Mark, P., Ayres, D. L., Darling, A., Höhna, S., Larget, B., Liu, L., Suchard, M. A., & Huelsenbeck, J. P. (2012). MrBayes 3.2: Efficient Bayesian phylogenetic inference and model choice across a large model space. Systematic Biology, 61(3), 539–542. https://doi.org/10.1093/sysbio/sys029
Drummond, A. J., Suchard, M. A., Xie, D., & Rambaut, A. (2012). Bayesian phylogenetics with BEAUti and the BEAST 1.7. Molecular Biology and Evolution, 29(8), 1969–1973. https://doi.org/10.1093/molbev/mss075
Lakner, C., van der Mark, P., Huelsenbeck, J. P., Larget, B., & Ronquist, F. (2008). Efficiency of Markov chain Monte Carlo tree proposals in Bayesian phylogenetics. Systematic Biology, 57(1), 86–103. https://doi.org/10.1080/10635150801886156
Stamatakis, A. (2006). RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics, 22(21), 2688–2690. https://doi.org/10.1093/bioinformatics/btl446
Stamatakis, A., Aberer, A. J., Goll, C., Smith, S. A., Berger, S. A., & Izquierdo-Carrasco, F. (2012). RAxML-Light: A tool for computing terabyte phylogenies. Bioinformatics, 28(15), 2064–2066. https://doi.org/10.1093/bioinformatics/bts309

phylogenetics