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ExaBayes

Description

exabayes website

ExaBayes is a software package for Bayesian tree inference. It is particularly suitable for large-scale analyses on computer clusters.

Environment Modules

Run module spider exabayes to find out what environment modules are available for this application.

Environment Variables

  • HPC_EXABAYES_DIR - installation directory
  • HPC_EXABAYES_BIN - executable directory
  • HPC_EXABAYES_DOC - documentation directory

Citation

If you publish research that uses exabayes you have to cite it as follows:

  • Ronquist, F., Teslenko, M., van der Mark, P., Ayres, D. L., Darling, A., Höhna, S., Larget, B., Liu, L., Suchard, M. A., & Huelsenbeck, J. P. (2012). MrBayes 3.2: Efficient Bayesian phylogenetic inference and model choice across a large model space. Systematic Biology, 61(3), 539–542. https://doi.org/10.1093/sysbio/sys029
  • Drummond, A. J., Suchard, M. A., Xie, D., & Rambaut, A. (2012). Bayesian phylogenetics with BEAUti and the BEAST 1.7. Molecular Biology and Evolution, 29(8), 1969–1973. https://doi.org/10.1093/molbev/mss075
  • Lakner, C., van der Mark, P., Huelsenbeck, J. P., Larget, B., & Ronquist, F. (2008). Efficiency of Markov chain Monte Carlo tree proposals in Bayesian phylogenetics. Systematic Biology, 57(1), 86–103. https://doi.org/10.1080/10635150801886156
  • Stamatakis, A. (2006). RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics, 22(21), 2688–2690. https://doi.org/10.1093/bioinformatics/btl446
  • Stamatakis, A., Aberer, A. J., Goll, C., Smith, S. A., Berger, S. A., & Izquierdo-Carrasco, F. (2012). RAxML-Light: A tool for computing terabyte phylogenies. Bioinformatics, 28(15), 2064–2066. https://doi.org/10.1093/bioinformatics/bts309

Categories

phylogenetics