eukfinder¶

Description¶

Eukfinder is a modular pipeline for classifying WGS metagenomic data and recovering potential eukaryotic sequences. It supports both Illumina short reads, Eukfinder_short, and assemblies or long-read data, Eukfinder_long.

Environment Modules¶

Run module spider eukfinder to find out what environment modules are available for this application.

Environment Variables¶

HPC_EUKFINDER_DIR - installation directory
HPC_EUKFINDER_BIN - executable directory
HPC_EUKFINDER_REF - reference database

Categories¶

metagenomics, genomics, bioinformatics