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Usage

Available tools:

  • Variant Effect Predictor - analyse your own variants and predict the functional consequences of known and unknown variants via Ensembl Variant Effect Predictor (VEP) tool.
  • ID History converter - convert a set of Ensembl IDs from a previous release into their current equivalents.
  • Assembly converter - map (liftover) data's coordinates to the current assembly.
  • Region Reporter - A script for sampling a given set of chromosomalregions, producing a simple summary of the features within those regions. Operates in batch and single region mode, and can serialize into GFF3 and textual format.

Required Modules

Serial

  • Ensembl_Tools

Parallel (OpenMP)

  • Intel
  • Ensembl_Tools

Parallel (MPI)

  • Intel
  • Open MPI
  • Ensembl_Tools