Ensembl Tools¶

Description¶

Ensembl Tools provide a number of ready-made tools for processing sequence data. Available tools: * Variant Effect Predictor - analyse your own variants and predict the functional consequences of known and unknown variants via Ensembl Variant Effect Predictor (VEP) tool. * ID History converter - convert a set of Ensembl IDs from a previous release into their current equivalents. * Assembly converter - map (liftover) data's coordinates to the current assembly. * Region Reporter - A script for sampling a given set of chromosomal regions, producing a simple summary of the features within those regions. Operates in batch and single region mode, and can serialize into GFF3 and textual format.

Environment Modules¶

Run module spider ensembl_tools to find out what environment modules are available for this application.

Environment Variables¶

HPC_ENSEMBL_TOOLS_DIR - installation directory

Categories¶

biology