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emerald

Description

emerald website

Tools for rapid on-the-fly LD calculation Exploits sparsity and haplotype structure to efficiently calculate LD Uses tabix indexes to support rapid querying of genomic regions Supports VCF (phased or unphased) and M3VCF formats Supports integration with Python and R

Environment Modules

Run module spider emerald to find out what environment modules are available for this application.

Environment Variables

  • HPC_EMERALD_DIR - installation directory
  • HPC_EMERALD_BIN - executable directory

Categories

biology