Elastix¶
Description¶
elastix is open source software, based on the well-known Insight Segmentation and Registration Toolkit (ITK). The software consists of a collection of algorithms that are commonly used to solve (medical) image registration problems. The modular design of elastix allows the user to quickly configure, test, and compare different registration methods for a specific application. A command-line interface enables automated processing of large numbers of data sets, by means of scripting. Nowadays elastix is accompanied by SimpleElastix, making it available in languages like C++, Python, Java, R, Ruby, C# and Lua.
Environment Modules¶
Run module spider elastix to find out what environment modules are available for this application.
Environment Variables¶
- HPC_ELASTIX_DIR - installation directory
- HPC_ELASTIX_BIN - executable directory
Citation¶
If you publish research that uses elastix you have to cite it as follows:
Categories¶
phylogenetics