egapx¶
Description¶
EGAPx is a publicly available version of the NCBI Eukaryotic Genome Annotation Pipeline that integrates protein and RNA-seq alignments with ab initio gene prediction to produce functionally annotated genome assemblies.
Environment Modules¶
Run module spider egapx to find out what environment modules are available for this application.
Environment Variables¶
- HPC_EGAPX_DIR - installation directory
- HPC_EGAPX_BIN - executable directory
Categories¶
annotation, genomics