effectorp¶
Description¶
EffectorP-3.0 is tool for prediction of apoplastic and cytoplasmic effectors in fungi and oomycetes.
Environment Modules¶
Run module spider effectorp to find out what environment modules are available for this application.
Environment Variables¶
- HPC_EFFECTORP_DIR - installation directory
- HPC_EFFECTORP_BIN - executable directory
- HPC_EFFECTORP_DOC - documentation directory
Citation¶
If you publish research that uses effectorp you have to cite it as follows:
Sperschneider J, Dodds PN, Gardiner DM, Singh KB, Taylor JM. 2018. Improved prediction of fungal effector proteins from secretomes with EffectorP 2.0. Molecular Plant Pathology, 19(9): 2094-2110. https://doi.org/10.1111/mpp.12682
Sperschneider J, Dodds P. 2021. EffectorP 3.0: prediction of apoplastic and cytoplasmic effectors in fungi and oomycetes. Mol Plant Microbe Interact, 35(2): 145-156. https://doi.org/10.1094/MPMI-08-21-0201-R
Categories¶
biology