Edyeet¶

Description¶

edyeet is a fork of MashMap that implements base-level alignment using edlib. It completes an alignment module in MashMap and extends it to enable multithreaded operation. A single command-line interface simplfies usage. The PAF output format is harmonized and made equivalent to that in minimap2, and has been validated as input to seqwish.

Environment Modules¶

Run module spider edyeet to find out what environment modules are available for this application.

Environment Variables¶

HPC_EDYEET_DIR - installation directory
HPC_EDYEET_BIN - executable directory

Categories¶

phylogenetics