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ea-utils

Description

eautils website

EAUtils are command-line tools for processing biological sequencing data. Barcode demultiplexing, adapter trimming, etc. They are primarily written to support an Illumina based pipeline - but should work with any FASTQs.

Environment Modules

Run module spider eautils to find out what environment modules are available for this application.

Environment Variables

  • HPC_EAUTILS_DIR - installation directory

Citation

If you publish research that uses eautils you have to cite it as follows:

Erik Aronesty (2011). ea-utils : "Command-line tools for processing biological sequencing data"; http://code.google.com/p/ea-utils

Erik Aronesty (2013). TOBioiJ : "Comparison of Sequencing Utility Programs", DOI:10.2174/1875036201307010001

Categories

biology, genomics, ngs