dynamicDBG

Description

dynamicdbg website

Compact data structures for the representation of de Bruijn graphs are important for genome sequence assembly. A fully dynamic data structure supporting efficient and exact membership queries for de Bruijn graphs was recently proposed in [1]. This software is an implementation of the data structure in [1] with dynamic edges (and not dynamic nodes).

Environment Modules

Run module spider dynamicdbg to find out what environment modules are available for this application.

Environment Variables

• HPC_DYNAMICDBG_DIR - installation directory
• HPC_DYNAMICDBG_BIN - executable directory

Categories

phylogenetics