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DVGfinder

Description

dvgfinder website

DVGfinder is a tool that integrates the most used DVGs search algorithms, ViReMa-a and DI-tector, in a unique workflow, making the analysis of a sample easier and more intuitive. Also, DVGfinder_v3 implements a Gradient Boosting classifier to try to reduce the number of false positives introduced by the search algorithms and generates an HTML report with interactive tables and plots that facilitates a first exploration of the results.

To run DVGfinder: - $ git clone https://github.com/MJmaolu/DVGfinder.git - $ cd DVGfinder - $ chmod -R +x . - $ module load dvgfinder - Follow the DVGfinder README 'Usage' instructions

Environment Modules

Run module spider dvgfinder to find out what environment modules are available for this application.

Environment Variables

  • HPC_DVGFINDER_DIR - installation directory
  • HPC_DVGFINDER_BIN - executable directory

Additional Usage Information

To run DVGfinder: 

$ git clone https://github.com/MJmaolu/DVGfinder.git
$ cd DVGfinder
$ chmod -R +x .
$ module load dvgfinder

For more detailed information, please view the DVGfinder README 'Usage' Instructions.

Categories

genomics, search, sequencing