DSK¶
Description¶
DSK is a k-mer counting software, similar to Jellyfish. DSK can be executed on any machine (only 1 GB memory required for a mammalian dataset) with reasonably low temporary disk usage, and supports any value of k. DSK can count k-mers of large Illumina datasets on laptops and desktop computers.
Environment Modules¶
Run module spider dsk to find out what environment modules are available for this application.
Environment Variables¶
- HPC_DSK_DIR - installation directory
- HPC_DSK_BIN - executable directory
- HPC_DSK_DOC - documentation directory
- HPC_DSK_EXE - examples directory
Citation¶
If you publish research that uses dsk you have to cite it as follows:
Categories¶
biology, ngs