DISCOVAR de novo¶
Description¶
DISCOVAR de novo is a new genome assembler designed for state-of-the-art data. The inputs are chosen to optimize quality while keeping costs low. Currently it takes Illumina reads of length 250 or longer — produced on MiSeq or HiSeq 2500 — and from a single PCR-free library as input. This new data enable a level of completeness and continuity in de novo assembly that was not previously possible. While DISCOVAR de novo can generate de novo assemblies for both large and small genomes. It currently does not call variants.
Environment Modules¶
Run module spider discovardenovo to find out what environment modules are available for this application.
Environment Variables¶
- HPC_DISCOVARDENOVO_DIR - installation directory
- HPC_DISCOVARDENOVO_BIN - executable directory
- HPC_DISCOVARDENOVO_DOC - documentation directory
- HPC_DISCOVARDENOVO_EXE - examples directory
Categories¶
biology, ngs, assembly