delucs¶

Description¶

DeLUCS is a deep learning clustering algorithm for DNA sequences. It uses Frequency Chaos Game Representations of primary DNA sequences to generate mimic sequences to self-learn data patterns though the optimization of multiple neural networks.

Environment Modules¶

Run module spider delucs to find out what environment modules are available for this application.

Environment Variables¶

HPC_DELUCS_DIR - installation directory
HPC_DELUCS_BIN - executable directory

Citation¶

If you publish research that uses delucs you have to cite it as follows:

Arias, P. M., Alipour, F., Hill, K. A., & Kari, L. (2021). DeLUCS: Deep learning for unsupervised clustering of DNA sequences. bioRxiv, 2021.05.13.444008. https://doi.org/10.1101/2021.05.13.444008

Categories¶

sequencing, genomics, machine_learning