delucs¶

Description¶

DeLUCS is a deep learning clustering algorithm for DNA sequences. It uses Frequency Chaos Game Representations of primary DNA sequences to generate mimic sequences to self-learn data patterns though the optimization of multiple neural networks.

Environment Modules¶

Run module spider delucs to find out what environment modules are available for this application.

Environment Variables¶

HPC_DELUCS_DIR - installation directory
HPC_DELUCS_BIN - executable directory

Citation¶

If you publish research that uses delucs you have to cite it as follows:

@article {Arias2021.05.13.444008, author = {Millan Arias, Pablo and Alipour, Fatemeh and Hill, Kathleen A. and Kari, Lila}, title = {DeLUCS: Deep Learning for Unsupervised Clustering of DNA Sequences}, elocation-id = {2021.05.13.444008}, year = {2021}, doi = {10.1101/2021.05.13.444008}, publisher = {Cold Spring Harbor Laboratory}, journal = {bioRxiv} }

Categories¶

sequencing, genomics, machine_learning