Delly¶

Description¶

Delly is an integrated structural variant (SV) prediction method that can discover, genotype and visualize deletions, tandem duplications, inversions and translocations at single-nucleotide resolution in short-read massively parallel sequencing data. It uses paired-ends, split-reads and read-depth to sensitively and accurately delineate genomic rearrangements throughout the genome. Structural variants can be visualized using Delly-maze and Delly-suave.

Environment Modules¶

Run module spider delly to find out what environment modules are available for this application.

Environment Variables¶

HPC_DELLY_DIR - installation directory
HPC_DELLY_BIN - executable directory

Categories¶

biology, phylogenetics