DeepPicker¶

Description¶

DeepPicker employs a novel cross-molecule training strategy to capture common features of particles from previously-analyzed micrographs, and thus does not require any human intervention during particle picking.

Environment Modules¶

Run module spider deeppicker to find out what environment modules are available for this application.

Environment Variables¶

HPC_DEEPPICKER_DIR - installation directory
HPC_DEEPPICKER_BIN - executables directory

Additional Usage Information¶

This software is installed in a container.

Basic usage:

launch_deeppicker autoPick.py --help

To see the list of available executables:

launch_deeppicker ls $HPC_DEEPPICKER_BIN

Categories¶

imaging