dDocent

Description

ddocent website

This script serves as an interactive bash wrapper to QC, assemble, map, and call SNPs from almost any kind of RAD data. It is designed to run on Linux based machines with large memory capacity and multiple processing cores

Environment Modules

Run module spider ddocent to find out what environment modules are available for this application.

Environment Variables

• HPC_DDOCENT_DIR - installation directory
• HPC_DDOCENT_BIN - executable directory

Additional Usage Information

This module will only work within an interactive job.

e.g. for a single core with 2Gb RAM for 10 minutes:

srun -p hpg-dev --pty -u bash -i

Alternatively, load the ufrc module and execute srundev.

To get 8 cores and 6gb RAM per core for 1 hour run:

srun -p hpg-dev -n 8 -mem-per-cpu 6 -t 60:00 -pty -u bash -i

Categories

phylogenetics