dcHIC

Description

dchic website

dcHiC is a tool for differential compartment analysis of Hi-C datasets. It features many capabilities, including:

Optimized PCA calculations (faster + capable of analysis up to 5kb resolution) Comprehensive identification of significant compartment changes between any number of cell lines (with replicates), including with pseudo-bulk single cell data Beautiful standalone HTML files for visualization of results Identification of differential loops anchored in significant differential compartments (using Fit-Hi-C) And much more!

Environment Modules

Run module spider dchic to find out what environment modules are available for this application.

Environment Variables

• HPC_DCHIC_DIR - installation directory
• HPC_DCHIC_BIN - executable directory
• HPC_DCHIC_GHB - github repository

Categories

genomics