Usage

Application must be run from a copy of the installation directory because dependencies are hard-coded to be relative the compiled binary (darwin).

$ cp -r $HPC_DARWINGPU_DIR /blue/$GROUP/$USER/mydarwin-gpu
$ cd /blue/$GROUP/$USER/mydarwin-gpu
$ darwin -h

Usage: ./reference_guided <REFERENCE>.fasta <READS>.fasta [NUM_BLOCKS THREADS_PER_BLOCK]