dadi

Description

dadi website

dadi is a powerful software tool for simulating the joint frequency spectrum (FS) of genetic variation among multiple populations and employing the FS for population-genetic inference. An important aspect of dadi is its flexibility, particularly in model specification, but with that flexibility comes some complexity. dadi is not a GUI program, nor can dadi be run usefully with a single command at the command-line; using dadi requires at least rudimentary Python scripting. Luckily for us, Python is a beautiful and simple language.

Environment Modules

Run module spider dadi to find out what environment modules are available for this application.

Environment Variables

• HPC_DADI_DIR - installation directory
• HPC_DADI_BIN - executable directory

Citation

If you publish research that uses dadi you have to cite it as follows:

Gutenkunst, R. N., Hernandez, R. D., Williamson, S. H., & Bustamante, C. D. (2009). Inferring the joint demographic history of multiple populations from multidimensional SNP data. PLOS Genetics, 5(10), e1000695. https://doi.org/10.1371/journal.pgen.1000695

Categories

phylogenetics