Cytoscape

Description

cytoscape website

Cytoscape is an open source software platform for visualizing molecular interaction networks and biological pathways and integrating these networks with annotations, gene expression profiles and other state data. Although Cytoscape was originally designed for biological research, now it is a general platform for complex network analysis and visualization. Cytoscape core distribution provides a basic set of features for data integration, analysis, and visualization. Note: export _JAVA_OPTIONS="-Xmx?g" where ? equals to the available memory.

Environment Modules

Run module spider cytoscape to find out what environment modules are available for this application.

Environment Variables

• HPC_CYTOSCAPE_DIR - installation directory
• HPC_CYTOSCAPE_BIN - executable directory

Categories

biology, ngs, phylogenetics