CDNA_Cupcake¶

Description¶

Cupcake is a set of supporting scripts for processing Iso-Seq data. It expects either high-quality isoform sequences (output of Iso-Seq clustering step) or full-length reads (output of Iso-Seq classify step).

Environment Modules¶

Run module spider cupcake to find out what environment modules are available for this application.

Environment Variables¶

HPC_CUPCAKE_DIR - installation directory

Categories¶

biology, ngs, sequencing