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csubst

Description

csubst website

CSUBST is a tool for analyzing Combinatorial SUBSTitutions of codon sequences in phylogenetic trees.

Environment Modules

Run module spider csubst to find out what environment modules are available for this application.

Environment Variables

  • HPC_CSUBST_DIR - installation directory
  • HPC_CSUBST_BIN - executable directory

Citation

If you publish research that uses csubst you have to cite it as follows:

Fukushima K, Pollock DD. 2023. Detecting macroevolutionary genotype-phenotype associations using error-corrected rates of protein convergence. Nature Ecology & Evolution 7: 155–170. DOI: 10.1038/s41559-022-01932-7

Categories

Biology, Phylogenetics