CrossMap¶

Description¶

CrossMap is a program for convenient conversion of genome coordinates (or annotation files) between different assemblies (such as Human hg18 (NCBI36) <> hg19 (GRCh37), Mouse mm9 (MGSCv37) <> mm10 (GRCm38)).

Environment Modules¶

Run module spider crossmap to find out what environment modules are available for this application.

Environment Variables¶

HPC_CROSSMAP_DIR - installation directory
HPC_CROSSMAP_BIN - executable directory

Citation¶

If you publish research that uses crossmap you have to cite it as follows:

Zhao, H., Sun, Z., Wang, J., Huang, H., Kocher, J.-P., & Wang, L. (2013). CrossMap: a versatile tool for coordinate conversion between genome assemblies. Bioinformatics (Oxford, England), btt730.

Categories¶

biology, genomics