CRISPResso2¶

Description¶

CRISPResso2 is a software pipeline designed to enable rapid and intuitive interpretation of genome editing experiments. It aligns sequencing reads to a reference sequence, quantifies insertions, mutations and deletions to determine whether a read is modified or unmodified by genome editing, and summarizes editing results in intuitive plots and datasets.

Environment Modules¶

Run module spider crispresso2 to find out what environment modules are available for this application.

Environment Variables¶

HPC_CRISPRESSO2_DIR - installation directory
HPC_CRISPRESSO2_BIN - executable directory

Categories¶

genomics, sequencing, biology